Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs6671926 chr1:227386971 G/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs6679378 chr1:24136007 C/T 4.55E-5 173 12.92 13.13 16.92 KM Plot
PAAD rs6682883 chr1:227635598 G/A 6.96E-13 177 15.33 16.07 1.37 KM Plot
PAAD rs66927628 chr15:31890509 T/A 1.39E-9 172 15.48 9.27 2.2 KM Plot
PAAD rs669667 chr12:6144169 T/G 9.27E-13 177 1.37 14.73 15.62 KM Plot
PAAD rs66994419 chr2:70465377 T/C 0 176 15.42 17.4 1.03 KM Plot
PAAD rs67012031 chr2:70522335 T/C 0 177 15.33 17.4 1.03 KM Plot
PAAD rs670246 chr11:74690776 T/C 7.71E-5 176 4.27 15.38 15.67 KM Plot
PAAD rs67030159 chr9:37258794 G/A 5.7E-5 176 15.38 15.53 3.9 KM Plot
PAAD rs67035281 chr2:70450429 G/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs6707364 chr2:70433359 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs6714166 chr2:70510997 C/T 0 177 15.37 17.32 1.03 KM Plot
PAAD rs67162478 chr12:6926962 AC/A 1.65E-12 174 15.67 15.4 1.37 KM Plot
PAAD rs67177274 chr1:216279204 C/T 0 175 14.6 17.4 0.4 KM Plot
PAAD rs6725960 chr2:70513680 C/T 0 177 15.33 17.4 1.03 KM Plot